NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137361_10180509

Scaffold Ga0137361_10180509


Overview

Basic Information
Taxon OID3300012362 Open in IMG/M
Scaffold IDGa0137361_10180509 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1902
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018691Metagenome / Metatranscriptome233Y
F085459Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0137361_101805091F085459AGGMNEIVALLESLRPILERWYLLLFAIVLVTLLGIPARMLVGALATLLRVPAAFTRAEIDPPLRRA
Ga0137361_101805092F018691GAGGMRPRLGFALPLIAALLVAGCGGLGASDTVCPGPTLEPVTTPAAAGASVTYGFLIDRAYTGDAKRSPSYPWPQLPMTALNTVAGALTKLDLRPGDSVFGTWISHNSNDMREIFLPLSQVPKSSTTEYPAAVPLPKAPLNQLECNDYTARVRAYNAAAKEWQTKVNEIAQRAAAEDAQTVATFIERTQSAILAASPVQDPVGTDIYGGLAVAGGVFGANPGKHKLVLFSDMTDTVGNPVRPDLAQSDVVVGLYHRDDPSDQGKGQRDWETTFKTLNARTPVFLPWAATTSDKIVEQLKASGR
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