NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137390_10080542

Scaffold Ga0137390_10080542


Overview

Basic Information
Taxon OID3300012363 Open in IMG/M
Scaffold IDGa0137390_10080542 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3200
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F016512Metagenome246Y
F018335Metagenome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0137390_100805421F016512N/AGDPAPVIVTMKVPNVDAVHVRLDVPVPLAVNDTGVTVNALQVRPAGRGVSDRATVPTKLNVLVRVIVELIDEPAGPLGDVALIVKSPTWTVELAE*
Ga0137390_100805422F001925AGTAGVILTGAGQVTVSPVVGLVTGVRLTVPAKLNVLVSETEITEPVAPELKFTGLLTLTVKSPTCEMKLAL*
Ga0137390_100805423F018335AGGALAVRPVAGETTVLRVTVPVKLPIGVIVIVELPVAPVLKSAGEDAEIEKSTVANVITKVVW
Ga0137390_100805426F018335AGGVEEDGLHVPVTAPEVTVRLAGQLAARPVEGETTVVRVTAPVKLPIGVTVIVELPVAPVLKSAGEEAEIEKSAEGPMTNTAVA*
Ga0137390_100805427F016512AGGVIVTEKLPEVGEVHDKLEVPVPFAVRDTGVTVNALQVKPEGRGVSERATEPTKLNVLVSVIVEETNEPVVPVGDVALIVKSPT*
Ga0137390_100805428F001925N/AVQDAATVAFAVILTGAGQVTVKPAAGLVTGVRATVPAKLNVLVKLTDIADPVAPELKLTGLPTLIVKLPTWTVALAE*
Ga0137390_100805429F001925GAGVQEAAKVAFAVMLTGAGHVTVKPVAGLVTGVRATVPAKLNVLVSETEIEDPVDPELKFTGLPTEMLKSPTCEMKLAL*
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