NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137390_10625695

Scaffold Ga0137390_10625695


Overview

Basic Information
Taxon OID3300012363 Open in IMG/M
Scaffold IDGa0137390_10625695 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1043
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001491Metagenome / Metatranscriptome685Y
F092403Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0137390_106256951F001491N/AMAQETSVVEQAIVRALRDNLESVKRTADELHHAVSDVVSACASNRPTNALPPLLRAQTCAASLAATL
Ga0137390_106256952F092403N/AISHTISFVPKPETARVRLLVCDTRTGMIGSVDLPYPAQVISASAAQSAKSAGEADKAAGPISPSTPATPHVIKFHGKEGRSGILEWNAERIVYSGDMQAEASAKALFDSLWAKSYSCESGRLLAVIDKTTPAPQPLHFRADDSHSAEVSLDGQDGVTYSGNVAVDPSVKPFFEALRSLYQCKSASATSTPR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.