NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134052_1009052

Scaffold Ga0134052_1009052


Overview

Basic Information
Taxon OID3300012393 Open in IMG/M
Scaffold IDGa0134052_1009052 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004359Metagenome / Metatranscriptome442Y
F093332Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0134052_10090522F093332GAGVFLTQQATDAKTAIQRTLADMQATVKEAADVRWWTQQYPWYAVGAAAAVGFVTATQVLAPADHRTPSAPPPQGHLAGRPSWMSSLFALVRSTLMGAIAEAMQASSQHSKRTQTEQAQVHADVC*
Ga0134052_10090523F004359AGGAGMYEQFEHLLQGLVSPLDHLKNAYSELADDLFRKLRQQIEVTQNELREGEQLEVYYTAQGHEPILVSRMGYLEPHLLVLYGQDDHNNDCKVLAHLLTAHLTLKLIRNGDPAKRRTISFVEPTKGT*
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