NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123365_1282973

Scaffold Ga0123365_1282973


Overview

Basic Information
Taxon OID3300012394 Open in IMG/M
Scaffold IDGa0123365_1282973 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_201_2m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)642
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NameLouisana Shelf, Hypoxic Zone, Gulf of Mexico
CoordinatesLat. (o)28.8679Long. (o)-90.4764Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007646Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0123365_12829731F007646N/AILCFLIAPELLISATTMQLRSVLVLVASAGAIKVHTAPDVAARVAEETAENIQIHDGFVAQEQEDVKKEKQVKADKDLSALQTKMTMKEGSWIVALEKDMKTEMLVQVGGIKDPCESIPCAGSLKCPVGFQPESIPGHCCDYCVNPNIEVKPEVTGATGSHGGKISTFCPKVFCFPTMCSGTETAATTTNGQCCGVCS*
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