NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134060_1210217

Scaffold Ga0134060_1210217


Overview

Basic Information
Taxon OID3300012410 Open in IMG/M
Scaffold IDGa0134060_1210217 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078525Metagenome / Metatranscriptome116Y
F097061Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0134060_12102171F078525N/AMIACAAGPVAAQWLGEPVWNSPKGGTGLTISGDYAKPNSDYGKGNTWGGRAALGLGTLTVSVGVESWKPDLATKAITSFGGNADFRLIGGSLLPVAVNLQVGAARSDSTATSRPAATRVIGAVGISVPLPTP
Ga0134060_12102172F097061N/AADAGKGSAYGGRVSFGAGSALLTVGAASWKPENSSARVTSFGGSLQARLIGGSLLPVAVNLQLGGAYHAKVTSGTQTLPEASTAQGAVGLSRPLPVPLIRLEPYFSPGVRYHRYWNAPAGTRKDETNVGWVLGANAGFRAFGIHLAYDSEKFANGTTRGVLGIGASVEISVPGL*
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