NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138266_1197565

Scaffold Ga0138266_1197565


Overview

Basic Information
Taxon OID3300012412 Open in IMG/M
Scaffold IDGa0138266_1197565 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067779Metagenome / Metatranscriptome125Y
F095570Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0138266_11975651F095570N/AMTEYLYDRENPKSHLRQRLTGIEGLFYGVPNINERADMIGRALAKETDGEFSKFVD*
Ga0138266_11975652F067779GGAMYWKTQPYRTNNRVRIIWVLMCYHLYQSFLLYVICKNKKENMTAKWRWHIGETNDKHSQAHSDRRMPADRHKNYVRYTNFHQIRRNKRLGMVHTNWWCRDQNFRKYFEMRKKNDIRPSDSGFQHFQLFDDVAKQNSEIAAMRLSQKAK*
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