Basic Information | |
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Taxon OID | 3300012413 Open in IMG/M |
Scaffold ID | Ga0138258_1518432 Open in IMG/M |
Source Dataset Name | Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA6.ICE_1m.20151110 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 834 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica | |||||||
Coordinates | Lat. (o) | -64.7711 | Long. (o) | -64.056 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018006 | Metatranscriptome | 237 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0138258_15184321 | F018006 | GAG | MTNAANAMNFAPMLSVLFIGARMRALQMDPVNGAPQKWAQNCFYMCTYATLAQVLISIAVTLVLSGTSEPNPKVEGDLTFKVENKAVGAILSVGRYLIMFCIYVGFSCVIYSIFTIQHPKGEQYTPPISVTMQCVINLTFQFFFIYLMIWICVTIDEFTGYKWQLLINTMENMKGTVAYCPMLAILFVGTRMRALLITNNRGAPQGWVQDGMYMATWAVLIQFLFGLLVPLAPERRRLVTRMALPSTSQNTQ* |
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