NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138263_1279599

Scaffold Ga0138263_1279599


Overview

Basic Information
Taxon OID3300012415 Open in IMG/M
Scaffold IDGa0138263_1279599 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA15.ICE_1m.20151115 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.7711Long. (o)-64.056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011729Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0138263_12795991F011729GAGMALRIIVALLVATSASAASLRQQSCIKSDLAHRAALQNKLAGVCVDMCKEVGAFPKCQCPDFVAPDSTPGVMTWPELLEHMDNLSEWGHGQIKGWTQQASALQKSVATEEACTSSDLKVRSALQNKLAGVCVDMCKEVGAFPKCQCPDFVAPDSTPGVMTWPELLEHMDNLSEWGHGELKAWSATAGASSFV
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Institute for Fundamental Biomedical Research
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