Scaffold Ga0138259_1541864

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138259_1541864

Scaffold Ga0138259_1541864

Overview

Basic Information
Taxon OID	3300012416 Open in IMG/M
Scaffold ID	Ga0138259_1541864 Open in IMG/M
Source Dataset Name	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA9.A_24.20151111 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	621
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location Name	Antarctica
Coordinates	Lat. (^o)	-64.775	Long. (^o)	-64.053	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046388	Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138259_15418641	F046388	AGGAGG	MGQKLDGLWTQLQTRVSKMEADLMKQDEDLHKEVNDRVDGVERQHSNISKENSKRLNAVDLRISGLQGSCGEHKRDINKLRDEVNSITVKSAAHDVDIGKNSDDLRRIERQRAEDSQRFKQDMDAVYEELDQKVYEKNFQSLEDNVTKLTRGTVKLCQ

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