NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0138262_1782953

Scaffold Ga0138262_1782953


Overview

Basic Information
Taxon OID3300012417 Open in IMG/M
Scaffold IDGa0138262_1782953 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 72hr light incubation - RNA13.B_72.20151113 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)897
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008601Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0138262_17829531F008601N/AGSVSTRVKQIKNGLTSLYLALPKNEKGYLDNATVCYALHRVFVQRHGWIIKGLDAAGSHRNSTSGAGLLKEQVPAYIQDLFEKRLGGRGFGLHETAVLAATIEHLVHSEAIKRMGDAMTLHNRLPTSVMSEQEADDLLDTYMMSYILGAEAPKTLSEALQLKAAMPQIYPGWEATQEFVHAVRRNVTEADASPEQKSSGELDFALVARTAERVGEQFGSFQDEECKQMKSSLVKIEDQGTGRVRLSEFYKASLGGHAHFQESAAYLKQLGALDETYIEKPRVIITNFITSQSNCIASS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.