NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138260_10122073

Scaffold Ga0138260_10122073


Overview

Basic Information
Taxon OID3300012419 Open in IMG/M
Scaffold IDGa0138260_10122073 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028520Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0138260_101220731F028520AGAAGMAFKATIAAACVGVGSSINLEARSNNFLAAFSETDQRDGFDANLEVSAEIRETLQGLAMELLAVRPVEGMASVREGMKAVSGKMDIRTAIKAIDHKNLPADVQALVKTASTHGTSGQFDETSMAKARIALNDLVEKAWVELDDKIIECKEYQEMNRATFDQVVTDISRLVEQITDLERVETESLEGISKMEMEIKAVEAELSKETKIYNFNFAKNTEELNKRQNDLDVFQFILTFTRCADATSLLQSNVNETRICAIKGGGHSMCFRDHGAQTRFNQMMSHSSKRAISEILAEVEGHKLPKFLQLSEDPVAPTGTTTANPAIAAAIASPPEPVAGGDEPLPKGFVPAPFCCEAYGVSCGPSGGGIMCSPDPPDCGLLHDKLSLMWGDYKDKVDELTMEMNKNAYMFEELQIELNDQIKILANSKARFSMMLSEARSNLAADREEVKAKEMQKLDVDKAYLAFMKLCCERVKWIMFQDMCALIVVRNAVLESSADCPGQEIVDCDVDNWV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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