Basic Information | |
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Taxon OID | 3300012419 Open in IMG/M |
Scaffold ID | Ga0138260_10994889 Open in IMG/M |
Source Dataset Name | Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 24hr light incubation - RNA10.B_24.20151111 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 685 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica | |||||||
Coordinates | Lat. (o) | -64.775 | Long. (o) | -64.053 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004919 | Metatranscriptome | 418 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0138260_109948891 | F004919 | N/A | AADPFAKVKQMIDSMITRLLNEANEDAQHEGFCDKEIGKSKVTRNKLSEDIDGLNAAVEDGKATIMSLTQEVATLTQEVADLDASREEATEMRTKEKAANRAAVQEAELATKAVSAATAVLKDFYEKASLATGLLQTGVSRPTMGSDEWQALANPNFEGTIDKGHKEGMQTFGKKYTGNQDAAGGVMGMLEVILSDFANDIATTKASESKSQETFDDFMVESKRTKA |
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