NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0150984_108796532

Scaffold Ga0150984_108796532


Overview

Basic Information
Taxon OID3300012469 Open in IMG/M
Scaffold IDGa0150984_108796532 Open in IMG/M
Source Dataset NameCombined assembly of Soil carbon rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1008
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.97364Long. (o)-123.117453Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000818Metagenome / Metatranscriptome878Y
F004649Metagenome / Metatranscriptome429Y

Sequences

Protein IDFamilyRBSSequence
Ga0150984_1087965321F004649N/AKVEKKSKFRIEKLEERIAPSSANFPPGQFPSGNPAHAPGRSNPNETPATNPSNG*
Ga0150984_1087965322F000818AGGAGMSARKDEKKSKFRIEALEERIAPAILQVNGGGNVPNGNANGVPASNPAGYEPPGQNK*
Ga0150984_1087965323F000818AGGAGMMETRNAVKKSKFRIEALEERIAPAITTIQVNGGGNTPNGNANGVPETAVNPAGHAPPGQNA*
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