NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157343_1020791

Scaffold Ga0157343_1020791


Overview

Basic Information
Taxon OID3300012488 Open in IMG/M
Scaffold IDGa0157343_1020791 Open in IMG/M
Source Dataset NameArabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)593
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025735Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0157343_10207911F025735AGGAGMGYPNEPGILRGWAQRCGRALVQRKTRGVGGVDHALAHVQPILRSVKEHHLLTKGKQVKRQVLTRWLTEVGQWVVHTRPLLRRLGDSRDRVTPRAPSTLVAMHEVAKRLMPQIVPWITTGGVAKGQIVQAGITQARALVRHKAGKAVEFGLPYLRSRLGGRDIFGTLIRGVVDESKRPLQALAGSRA
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Institute for Fundamental Biomedical Research
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