NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157355_1008824

Scaffold Ga0157355_1008824


Overview

Basic Information
Taxon OID3300012493 Open in IMG/M
Scaffold IDGa0157355_1008824 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003121Metagenome / Metatranscriptome506Y
F026630Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0157355_10088241F026630GGAGGVTNASQTRESVGLNKTVYCRVIASALSGTMKHRRAASERERPGHCVQLRLCEIPLPL
Ga0157355_10088242F003121GGAMETIYGTQTIFGMQTIAGTETISEMETTICGATGKNTFSLTNQGIGIAAGTAAATTGGMATNAPSLMDRG*

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