NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157353_1039305

Scaffold Ga0157353_1039305


Overview

Basic Information
Taxon OID3300012496 Open in IMG/M
Scaffold IDGa0157353_1039305 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002449Metagenome / Metatranscriptome558Y
F015166Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0157353_10393051F015166N/AVTLRWPDAGLRLRYHVYLQGPGEPGGAPVKITQRTGATITRLQSGSYRARVVPVNFRKQTGRAAEVTFTVP*
Ga0157353_10393052F002449AGGAGLVRLIIAVVVGVAIAIGGSVLVVNVLSSHGNGTPSTSSTYNYGSR*

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