NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157354_1015565

Scaffold Ga0157354_1015565


Overview

Basic Information
Taxon OID3300012517 Open in IMG/M
Scaffold IDGa0157354_1015565 Open in IMG/M
Source Dataset NameUnplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)825
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9076Long. (o)-79.0506Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058428Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0157354_10155651F058428N/AHIERARTYLREKEILRMLQAGHLDSQIVRKMKCHHTTVKRLRDQVTNARLCECGQLFFHTSKCRRRPGWQTKVSERRQGFDELLVRISRRVPSVFPEEMREEICQEMLLEISRSIDRVLANAPDFIRKYKKRYPFQYHSFDANPKLLERIAG*
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