Basic Information | |
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Taxon OID | 3300012528 Open in IMG/M |
Scaffold ID | Ga0129352_10168784 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 728 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.0306 | Long. (o) | -76.0464 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F078764 | Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129352_101687842 | F078764 | N/A | SPDFCYQAWPSFVYENTRAIEWAWNQTDGPMASLVDWDAGAGVAGHSMGGEVVSQLAGSELASKYNVKAAVCEHCLMCIKTGDLVSTPAMFMTGTLDYEVTPKKVKAAYQSDTSVPKSYRNQKGKGHLEMLNLEVQYNPAVASHAAAFFNVWLKGDQDVFYNQVYGDGEDSFCGYGNMKECEHVMSPAGSSQLV* |
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