NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157476_100279

Scaffold Ga0157476_100279


Overview

Basic Information
Taxon OID3300012568 Open in IMG/M
Scaffold IDGa0157476_100279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2373
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.097417Long. (o)-82.141111Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F016114Metagenome / Metatranscriptome249Y
F078633Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0157476_1002791F078633N/ALDAQHLFGIYIPVMRHTWQPDLKREWYAALWSKHDKTMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT*
Ga0157476_1002793F016114N/AMKNYKHEDYWAAAFFDSRDVETINEMAAMARRMLICQGELQRDELLRLKMKYPHLTTKD*
Ga0157476_1002794F005775N/AMAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRDLFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLVDVFEQLTLFLKNNAGKLDQVVTKELDTYTTHHLKNLLNTNEK*
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