NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1000371

Scaffold Ga0157203_1000371


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1000371 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14242
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (57.58%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010684Metagenome / Metatranscriptome300Y
F015600Metagenome / Metatranscriptome253Y
F023106Metagenome / Metatranscriptome211Y
F024789Metagenome / Metatranscriptome204Y
F040623Metagenome / Metatranscriptome161Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100037122F023106GGAMRISRRITDEEKVANKLGNTISDLRVDLELVGEYLAKSQPNVVYNRLQVIAESAKETKEGTNYAHNNI*
Ga0157203_100037124F010684AGGAMNTYEVEVIFEPTGDYMNFKYEAESDNEEDLCREILNQLSIVSFKVDE*
Ga0157203_100037127F015600GAGGMMNMTLEPRLQKLIDLGESGTDILHGELKNLMLEAETEYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRTKNRG*
Ga0157203_100037131F040623AGGAGLKVRISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISVEYIED*
Ga0157203_100037132F092053AGGAMKIKISKEHKEELQDQASQIVYFEASMSDEDDAVKGTYLRLVEIYKVAFEAGANSK*
Ga0157203_10003718F024789N/AMERFGALMPKDPKIMTMDWRSLGYWPIWKDGKKIWVPKDDKSFDKD*
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