NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001153

Scaffold Ga0157203_1001153


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001153 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6659
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002245Metagenome / Metatranscriptome578Y
F003690Metagenome / Metatranscriptome473Y
F006744Metagenome / Metatranscriptome365Y
F017134Metagenome / Metatranscriptome242Y
F045755Metagenome / Metatranscriptome152N
F076101Metagenome / Metatranscriptome118Y
F085710Metagenome / Metatranscriptome111Y
F097310Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100115310F097310GGAGMGKVKQLLDEILNCDLCNGKGWLFAGNTLDYDVEACECNPNEFEVNY*
Ga0157203_100115312F006744AGAAGGMNLDEFRAYVEATRQASKAEALSVLSAKMSITTTTKGDN*
Ga0157203_100115316F003690AGGAGMINDGLQLLISEYGFELDSFLGAIYLPWHTIIITTLAVIAYKIYKRKKNK*
Ga0157203_100115318F085710AGGMLLLEVGSNLMNDYYDEIYLDIYLEFGADSVSDPAYAEQLAKDKGVR*
Ga0157203_10011533F002245N/AMTVPHTVTFEAVIDLDKIPAHLLPALIALDEKSIQEMCKGATVHALGMSNTLEVANENNTWAELTVKEGN*
Ga0157203_10011536F017134GAGGMELFTVSCLNYEICGAQETFHDESEYEVYGDDYTCAECYASEEMEFYELTGWADSDALASAGHGMDEDY*
Ga0157203_10011538F076101GGAMYKITLAYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFANEFSTVNIYTPELKCYTKNFYRSGMVATK*
Ga0157203_10011539F045755GAGGMSEIAGMWICDNCDTLAIVSVLTDTIQITQCKCVTNERETNV*
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