Basic Information | |
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Taxon OID | 3300012663 Open in IMG/M |
Scaffold ID | Ga0157203_1001414 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5873 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (28.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Warsaw, Ontario | |||||||
Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F006935 | Metagenome | 361 | Y |
F022886 | Metagenome / Metatranscriptome | 212 | N |
F030763 | Metagenome / Metatranscriptome | 184 | N |
F053288 | Metagenome | 141 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157203_10014141 | F030763 | GAG | MLVIKNYKKIKNQYFGDWQIGKVEEMKECYALQAFNANTKKSITMAIVREPLAESTDTYETAYHFSLVEDDIRPANIIEDVIYHSVLEDMELFGESLVHYLNSL* |
Ga0157203_10014142 | F022886 | GGA | MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQKEHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVRV* |
Ga0157203_10014143 | F053288 | N/A | MITIKNYNSDVGHATFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRAKNVPVSGDLHEVYIQDMVSDKWRRTLNLTKPQLHKSAFYNWVESVIDDEYGLPF* |
Ga0157203_10014146 | F006935 | N/A | MDKGFAKQIIGWAEEAKETLSIRKEIIMDDDTTDEELGMIIRMMYGAKVKAQDETILKTKQNSGLWENGL* |
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