NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1001898

Scaffold Ga0157203_1001898


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1001898 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4876
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Fibrella → unclassified Fibrella → Fibrella sp. ES10-3-2-2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_10018982F002406N/AMENIKWIRAMSDRLRDELSKEYDDDTKDLIIRAFMEGLHQQPAIVEELKSSSLIESDYFEDAE*
Ga0157203_10018983F019834GAGGMKELKFTITGTIIVPDNVEYENDFENQIYSFKIGDETYSLIAGLWTDEKEIIVTDENFKNHNILPVQYEDAYFED*
Ga0157203_10018985F002398GAGMFPLVSILILSSLNPINNFVSLKTYISENAKIHCKVYFINEDLPDFPRVKLIEGSRVDFFKYLDTIGVEHTKVGSYYFFTRKSK*
Ga0157203_10018986F009266AGGAMTDKERNVLDKEIQYLCKHFIDRVQAIRDYTGINPDYTVLKEVETIEYLYKSILEERKHDGTYFCVGTSGWNVVYLRNKKTYKKDEKFWIKIYHSFVFTDNFD*
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