NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1004305

Scaffold Ga0157203_1004305


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1004305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2852
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013526Metagenome / Metatranscriptome270Y
F017484Metagenome / Metatranscriptome240Y
F048982Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100430510F048982AGGGGGMSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDFEKQRIATLFTNDLLEQEKNK*
Ga0157203_10043056F017484N/AVGKIMSSLEIFRLDEQGAGWVSLEDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCINHKNVKGGIYLD*
Ga0157203_10043057F013526AGGGGGLTKKNVLISFVTDADTDLQAVFNLNKVLHKLSDNELEKFNAFEVLDVE*
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