NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1007503

Scaffold Ga0157203_1007503


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1007503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022411Metagenome / Metatranscriptome214N
F051927Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0157203_10075031F051927N/AMRRCIECGSEVIDFDKTCTACRVSEWQDQQAQAQKLRERHYALEANRAAYLGRKRAVRDSIRAGVVTAVVVMMFLALVSATRDAMRYEYQTKPAMLKQNGVK*
Ga0157203_10075034F022411GGAGGMQVSRRTTGYIMAIPATDAVQAIAFLRHLFKPYTDGFIEIRPLSKHKPHANRTTYRIPECLKGEAGQALSQHIISLAMRGYDVYVGVCPRAAPEGPGRKLGKESIEYVGALWLDLDSKVPGSSQ
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