Scaffold Ga0157203_1036098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157203_1036098

Scaffold Ga0157203_1036098

Overview

Basic Information
Taxon OID	3300012663 Open in IMG/M
Scaffold ID	Ga0157203_1036098 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	684
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Warsaw, Ontario
Coordinates	Lat. (^o)	44.42735	Long. (^o)	-78.1359	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008752	Metagenome / Metatranscriptome	328	Y
F033792	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157203_10360981	F008752	N/A	MKKEMMSEPLTELEPQVPAEGVLKRNDWGDAITYQVVCECQDANHDHNVWIEADDHRVTVTTYTTQKSKWWRLNRWQTIWILLTKGYVEYEANIIMTEQQALNYAETLKTAIKDVKNFKQPLTKHFSARRCKKTC
Ga0157203_10360982	F033792	GGA	MSITDKNQHSIEDLYAKYLQFTGVMLEDYKDIEIAGVMITQALSMYRTVLSEEDYQRMVKSIYEKRNDVRTFDGT*

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