Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1000137 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38227 |
Total Scaffold Genes | 70 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (78.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012854 | Metagenome / Metatranscriptome | 276 | Y |
F088306 | Metagenome / Metatranscriptome | 109 | Y |
F096673 | Metagenome | 104 | Y |
F096876 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100013716 | F096673 | GGTGG | MSFDIITKEGMRVTQWFSSVDELLKSMLANPKDRYWRNT* |
Ga0157210_100013750 | F012854 | GGA | MIDMTQAIYKLYSQVVTIIGDVAYDVNGNVVNYDLQAVTAQAEADAQAAIDTKASALDKLTALGLTQAEVKALLGL* |
Ga0157210_100013753 | F012854 | GGAG | MITTKQMNVVFQLYPQIKKMIDDTAYDAYGNEVAYDLQAVTAQAEADAQAIIDTKASALAKLAALGLTQDEVKALVG* |
Ga0157210_100013754 | F096876 | AGG | MTDSVERIAVLEAEVEKLQTSQKEILECIHSVRDEMMRYKGFLGGVAFLASGIGIFLTVFKDWILKHF* |
Ga0157210_100013765 | F088306 | N/A | MIKVPVVIREDYTMLLELHDNLIWFHTDIRKWTPKIKIKYLGDLHLLQHLVSIPLVALVHEDDTKLAKFGRTIGFEFKQPFLGQDNKMYHIYSRSL* |
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