NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1000137

Scaffold Ga0157210_1000137


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1000137 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38227
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012854Metagenome / Metatranscriptome276Y
F088306Metagenome / Metatranscriptome109Y
F096673Metagenome104Y
F096876Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100013716F096673GGTGGMSFDIITKEGMRVTQWFSSVDELLKSMLANPKDRYWRNT*
Ga0157210_100013750F012854GGAMIDMTQAIYKLYSQVVTIIGDVAYDVNGNVVNYDLQAVTAQAEADAQAAIDTKASALDKLTALGLTQAEVKALLGL*
Ga0157210_100013753F012854GGAGMITTKQMNVVFQLYPQIKKMIDDTAYDAYGNEVAYDLQAVTAQAEADAQAIIDTKASALAKLAALGLTQDEVKALVG*
Ga0157210_100013754F096876AGGMTDSVERIAVLEAEVEKLQTSQKEILECIHSVRDEMMRYKGFLGGVAFLASGIGIFLTVFKDWILKHF*
Ga0157210_100013765F088306N/AMIKVPVVIREDYTMLLELHDNLIWFHTDIRKWTPKIKIKYLGDLHLLQHLVSIPLVALVHEDDTKLAKFGRTIGFEFKQPFLGQDNKMYHIYSRSL*
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