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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012665 Open in IMG/M |
| Scaffold ID | Ga0157210_1000149 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35738 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (64.81%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Douro-Dummer, Ontario | |||||||
| Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027776 | Metagenome | 193 | Y |
| F039985 | Metagenome / Metatranscriptome | 162 | N |
| F044360 | Metagenome | 154 | Y |
| F052463 | Metagenome | 142 | N |
| F056414 | Metagenome | 137 | Y |
| F065772 | Metagenome / Metatranscriptome | 127 | Y |
| F079788 | Metagenome | 115 | Y |
| F098688 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157210_100014913 | F098688 | AGGAG | MSKRDLALDSLTRICEIQQRLINQLIAMEQSSYARGYEDGMAAQAEVDIALNEIASGEPK |
| Ga0157210_100014915 | F079788 | GGAG | MDDDDIDSWATIALGLIASIFFFIGIVSVVAAACMAWGYYTYEPICGSIAALFTQECK* |
| Ga0157210_100014916 | F027776 | N/A | MVVCMMNPLEIEIKKTVFAHLPAVGDFGVIDRGDLATILHSACTEVALAGWARGADSVQRRLDQELEILRQELKAAQIELDYAKAN* |
| Ga0157210_100014917 | F056414 | AGG | MHFATAVCDAVINCDMMRPSSTNGANMKLTNYQRSQLKAAACFGCGQIDKVAASLQRENPEAFLRESELADRDFYHQPMAAHRSYVERFLPRRKSEYSQEQRQIMEQNHYLTTTYQIGVGA* |
| Ga0157210_100014923 | F039985 | AGGA | MLNLSNNSGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDEVLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYNEAEKAAGDNFGKLPVIEYVNSTPEKVGKGNTRVPNFKLVSWVARPAGMNAEDGLEQWAEPEPTPVRKAKPAPAPVMDDEEFF* |
| Ga0157210_100014925 | F044360 | N/A | XVFEHSLMVEMETAKMEHEKVWGIDRVIDLVDAEFRRKVSAQRERIWEASQARDEERLEKAIKGMIAAYKALNRWATEAGIEQMPKIDCMEYKMADGSLMVIVRDKQMATWYDQFHKLPANRSVWTLEELEVVMNSKTLTHVREIKAAIPGTRMIPIQPQGSSGFEDMENDIDISKPFKGGKMFDTKAAERDKNERRK* |
| Ga0157210_100014926 | F052463 | GGAGG | MPGNPKVKADLALLEDLDAELVLSMFEEGRSKADICRGLGIGRRALDRWIDENDYHSIITRARVEAASHLACETLAIADSMDVDNAQRDVQRIRTRQWLAERWDRKTYGTDKAQSVNISIQGLRMEALRHVEVVEELSTDRMQKLSTEQVQLPND* |
| Ga0157210_100014935 | F065772 | N/A | MNMNDMPVTTDVAAQETMDDTELEAIIGQDLTDAVSYIDSDISPVRAMGTAYYRXXXXX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |