Scaffold Ga0157210

Basic Information
Taxon OID	3300012665 Open in IMG/M
Scaffold ID	Ga0157210_1000172 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012665 Open in IMG/M

Scaffold ID

Ga0157210_1000172 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Talbot River, Ontario, Canada - S11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32047
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32047

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Douro-Dummer, Ontario
Coordinates	Lat. (^o)	44.4982	Long. (^o)	-79.1546	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Douro-Dummer, Ontario

Coordinates

Lat. (^o)

44.4982

Long. (^o)

-79.1546

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F006112	Metagenome / Metatranscriptome	381	Y
F006506	Metagenome / Metatranscriptome	371	Y
F006698	Metagenome / Metatranscriptome	366	Y
F008493	Metagenome / Metatranscriptome	332	Y
F035300	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157210_10001722	F006698	AGGAG	MRYYDELAVYERNGFDVIVDKSYEDIHPSDLFDDSEFDIKQLCQDIESGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAKEVLTDGTAEDLIDMALTEAKKDVYRLYKKFQDISWELDAEGATA*
Ga0157210_100017226	F002268	AGGA	MNGTPASSSPGISGFIEIFDGRLNKMKLHLKEELSKAKGERDRKAIRRIIADARKLNKTLKEMRNANTKLCPHCGEKL*
Ga0157210_100017235	F035300	AGG	MDELKIRFDSDENKYYVYFDNPFGGCAYQSDPFNTLAEAETFKQEQEDSADYGN*
Ga0157210_10001724	F006112	AGGAG	MKQDYTMYIYKADKRTKTGERLFSTTVWTDRTAEGMRHECNGLYWLYPATKGWRFEYFPTMKTVKNLMSGKDVQIAHDTPRSCDPSSELYWSM*
Ga0157210_100017251	F006506	N/A	MLNKAGVTKMKKLLAITALITLTGCASIVDMIPSKWDANQAKVITDIQVQTNHFDCKGDQSQQLKSLALNVEWFDTYAKTKPTKDIAKLTGTITATVKEYQDRLKTGPVSPMYCDIKIKIIKQQADVLAKTTQGRF*
Ga0157210_10001726	F008493	N/A	MTSERGDSYIGLTRKSLPNADKVIAERWRKHRSRAVNENRLWALYIYLKSGGLTMNWTHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157210_1000172

Overview

Ecosystem & Geography

Associated Families

Sequences