Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1001791 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6168 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F028165 | Metagenome / Metatranscriptome | 192 | N |
F043939 | Metagenome | 155 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157210_100179111 | F028165 | AGG | MAIAFSIEEKKERIRQAMEVYATTGTWSKADNIVRRQSVEKWVRDPELLAYATSLGYQQMCTDEVAGFAPVTAHYTARIGFSGALVHMRDGKYVCRDGARIHYAVQHGQMVMYKLDGAGNRHHVGPAYFRGADVMANDWMIIR* |
Ga0157210_10017915 | F043939 | AGG | MAIPATDAGQAIAFLRHLFKPYSDGFIEIRPLSKVKPHANRTTYRLPHCLKGEEGQALTQHIMSLAMRGYDVYCGVCPRVAPPGPGRKLGKDSIEQVGSVWIDLDAKVPGSSQGLLDTCDIVVATGNGWHGYVMLPAVANCRNTKDRTAIEAKIRSWQNSIILGTDPVGNVDRIMRIPGTLNWKNPDEPKAVTLLKGGAMRPTHKESLIVRHLKDGRLDALLASAKQGQLGRAVPRIRHASGRITDLLDVFFLEAEEACQAFESNAAWEYRLDIVRADLPEIMEYYFGS* |
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