NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1001813

Scaffold Ga0157210_1001813


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1001813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6099
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019448Metagenome229Y
F026266Metagenome198Y
F045754Metagenome / Metatranscriptome152N
F050379Metagenome145Y
F073554Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_100181310F050379GGAGGMTDEQLQQIANDLIKQYKHEIVRDGDWWHGIDGYSFNIHSLEDDADAEGYDWYSINVYKVDPVTGMDNYEWMIDLEPVFLGEITV*
Ga0157210_100181312F026266AGGAMTIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRDLDSAMYQGINVLDVISHDQWKNLEWEASKKYKLEHNEQLTIDHDNKSTLEAIYGLLKPSFYIR*
Ga0157210_100181315F073554AGGAMSIEMMNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLNKAHSGHVAAQEDPFAW*
Ga0157210_100181316F045754N/AMNIDENKPWPFPSHFGDVHEDDKLKADCLALLQDFTAFQLRGEIYYGYLDVKALKVIEELREAQDNEAKPST*
Ga0157210_10018139F019448AGGAGMTSMTKTQMINACVDYEADWFFDREPAEQREVFRFIQLHGFEGFKKYSDDALFASCVHNGTFLMEE*
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