Basic Information | |
---|---|
Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1002144 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5323 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000369 | Metagenome / Metatranscriptome | 1222 | Y |
F000376 | Metagenome / Metatranscriptome | 1216 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157210_100214410 | F000369 | AGAAG | MNNEIEPAVHFDRMNKVVSELLKGNSATQIASITGFSRKEVLEFVDEWKSVVHNDSNIRDRAREAISGADQHYDMLIKEAWKTVEDADQAGQLSVKAGALKLIADIETKRIAMLQSIGVLENTQIASQIAETERKQEILVGILKEVTSGCPKCKMDVAKRLSQITGIVESVVIQDADVV* |
Ga0157210_10021448 | F000376 | AGGA | MSEYQERAKMCKCCTKHVPLPTSLIEYEGLLLCPTTHSNIIEYKRIWNSFGQRPMGSIRKHFSEYVQQIVERTIDKPSS* |
⦗Top⦘ |