NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1003244

Scaffold Ga0157210_1003244


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1003244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3809
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015599Metagenome / Metatranscriptome253Y
F018537Metagenome234Y
F018924Metagenome232N
F030760Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10032441F030760N/AVSQSGDKITIKGLSYSVIMTIAKSNTELQSITITKQYDKKIK*
Ga0157210_10032442F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKGWGKSRQNDVPWRVAQYIDIYLHHANPNRMRIWKKQGMERKNLQLNDTNVMIARMLGSMGHGLADGVKHSEQSKSIPALQTIRQLQYQTQMQDPKFQRKEMKRKYMNKGYHLQPGDWGFIAQSLLDYTETSGKLTFTQLKTYYDVILRGNKTIQKGGSFIHHLQSLVSPANAIGRRCKRYLHKELGTGKYRIATM*
Ga0157210_10032443F018924N/AMTNSEKAIAQLFGVLCSVVKSEHTPQATKQATISTFQHLIGEEGSPFLDDELIQLSIAMDNEMQSIVRQLNGDRILNNVLTNNINLN*
Ga0157210_10032446F015599N/AMIIENIKVKKHHNNMKLTIKNYEKLFLKTWDDKNYIEDIDERRDEYRINVWRGHMRHLIILNRRPVENGYYTIGKWSNEAYCVRYPYWIKHTDIMNIDSLMDKLKLMTDEWKPKLL*
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