NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157210_1005980

Scaffold Ga0157210_1005980


Overview

Basic Information
Taxon OID3300012665 Open in IMG/M
Scaffold IDGa0157210_1005980 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Talbot River, Ontario, Canada - S11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2404
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameDouro-Dummer, Ontario
CoordinatesLat. (o)44.4982Long. (o)-79.1546Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010315Metagenome305Y
F012661Metagenome278Y
F014365Metagenome263Y
F062704Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0157210_10059802F012661GAGGMELKPKKRTPKPEGKRGQVVFYSEQEKKALAHIGSGSIAEGARISIQWAAHFWRVGLRPDFDINHVGICLFVDDELADEL*
Ga0157210_10059803F014365GAGGMKTFQIFKNVSYEYFVEAETLEEAQNKIIQENPEPESEDLIEWVFADEHDGVNWTCEPVTHS*
Ga0157210_10059804F062704GAGGMTQTQALTQALVLAITAPDDQKAQMAIDLSVELAMRLNAADVERCKADALLILGTS*
Ga0157210_10059806F010315AGGMNHLFEEFQGADVERLADCLIAIRKAGLKVDKYTQAGVNQSSGNVWVWSEDWAGCVACSIGFDVFWVYSCRECGEEFEFDTYADLEKFSEENTDDCSMCRTEEVAA*
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