Basic Information | |
---|---|
Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1005980 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2404 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010315 | Metagenome | 305 | Y |
F012661 | Metagenome | 278 | Y |
F014365 | Metagenome | 263 | Y |
F062704 | Metagenome | 130 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157210_10059802 | F012661 | GAGG | MELKPKKRTPKPEGKRGQVVFYSEQEKKALAHIGSGSIAEGARISIQWAAHFWRVGLRPDFDINHVGICLFVDDELADEL* |
Ga0157210_10059803 | F014365 | GAGG | MKTFQIFKNVSYEYFVEAETLEEAQNKIIQENPEPESEDLIEWVFADEHDGVNWTCEPVTHS* |
Ga0157210_10059804 | F062704 | GAGG | MTQTQALTQALVLAITAPDDQKAQMAIDLSVELAMRLNAADVERCKADALLILGTS* |
Ga0157210_10059806 | F010315 | AGG | MNHLFEEFQGADVERLADCLIAIRKAGLKVDKYTQAGVNQSSGNVWVWSEDWAGCVACSIGFDVFWVYSCRECGEEFEFDTYADLEKFSEENTDDCSMCRTEEVAA* |
⦗Top⦘ |