Basic Information | |
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Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1015589 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1269 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002413 | Metagenome / Metatranscriptome | 561 | Y |
F004790 | Metagenome / Metatranscriptome | 423 | Y |
F025265 | Metagenome / Metatranscriptome | 202 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157210_10155891 | F025265 | N/A | DKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEFMEYISPACGQTILVGVEVEANGEWQGKPQYKYKLTYPKGSQKPAVQDTPPPEGVPF* |
Ga0157210_10155892 | F002413 | N/A | MTDAPTPMSAPTLVLISGFARAGKDTLASGLLEWSKRPAEHINFADALKEAGNYFMDYLGLDGNFMNEEFKIENRDTLVAMGRFARRLDKDVFARHFANWCPIMKHHDQPAPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARHQIMTEGRNLARSWKL* |
Ga0157210_10155893 | F004790 | N/A | METLTPETIAWASKVGLSVDRVAFLLACPKYTVSKGHRKSDKVVTDNPNHHLQRLGDCYWFRLRRRGTDIVENIGKDIETARKRRDEMLAAFDSGKPVPYLTTK* |
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