Basic Information | |
---|---|
Taxon OID | 3300012665 Open in IMG/M |
Scaffold ID | Ga0157210_1041653 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Talbot River, Ontario, Canada - S11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 708 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Douro-Dummer, Ontario | |||||||
Coordinates | Lat. (o) | 44.4982 | Long. (o) | -79.1546 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000957 | Metagenome / Metatranscriptome | 821 | Y |
F005588 | Metagenome / Metatranscriptome | 395 | Y |
F071224 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157210_10416531 | F000957 | GGA | MSNFKHLDGMRNLILEIYEVNERIMTGDICSAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVP |
Ga0157210_10416532 | F005588 | N/A | MPDPLSHHTDMITIRPKSKPAFWWLVPWAYACELHRAANAVKAYADRLDDILNIQRGIIEQQAADIRLLKQRVRDQDDAIIKGTAITPDAHPHE* |
Ga0157210_10416533 | F071224 | N/A | PQIAALNAAGKSQGDAAAALDTTVGTLRMWLDITNTPWVNLKKRGPYNISR* |
⦗Top⦘ |