NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157498_1010986

Scaffold Ga0157498_1010986


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1010986 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin006(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010611Metagenome / Metatranscriptome301N
F019637Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10109861F019637N/AMQNNQIQFLVDQYGLINVAWFIRLMKRGTTPEQVVSYCVPNPQDSRRDGVFRALQYAGTVPDSMLPPEILGALKP*
Ga0157498_10109862F010611AGGAGMTQREYAKHAGVSHGYVTQLAAKGMPMHSPEVADAWRKKNIRSKSTTQHIETPLKPDPTAIEQEGPYRPIEAESPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKS*
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