 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012667 Open in IMG/M |
| Scaffold ID | Ga0157208_10000356 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13560 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (52.94%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Keswick, Ontario | |||||||
| Coordinates | Lat. (o) | 44.22385 | Long. (o) | -79.4212 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F002997 | Metagenome / Metatranscriptome | 514 | Y |
| F022651 | Metagenome / Metatranscriptome | 213 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157208_1000035610 | F022651 | N/A | MTVTVKDNSDLLNFLVTQAESRKDWFGFVQQRITAVALAHDIARHHADKMTPEQVASYALELNEVIYHKIIKTTR* |
| Ga0157208_1000035614 | F000934 | GAG | MSLQNILSISESVGINDQRFIGQTVSRNQKITTSEILTVVPFAFELKPMNYLLYSRNRGLLNSLRIPDKALTQYLNFGSTGWLNYIQYQGDMTETQIENCQWQTSSANTTLVLGSLPSISSSKYLFRIGDFVQVGLYSYIVTADVVRGPNPTVNVPVHRSLIDALTSTVPCVAGEFGTTVSMGGDTYTGVTFPVVLRDYPTYTLMPITNDSFINWSGSFKAFESVL* |
| Ga0157208_1000035615 | F002085 | N/A | MNVIAPVDGTSSIRLADFVRVNTGGDIYRFTTAPSDTLVTAVDSLPFSAVGTLMKVGDVQRDIKSTANETSVTLIGIDTAMLGWVLGQTVKGSQIEMWHGFYNEQNELLTSGGSGGLYQFFSGVITSFTISETWMEETREYVGAITIAASAIQLILQNRIAGRYTNNNSWQFFNTGDTSMNRVNFIETINYQFGKNT* |
| Ga0157208_100003567 | F002997 | N/A | MAIARFENIAVNNLTFSESGFGEGVTTQTKWFDTRARVSDVANSLRIADKYRLYQELTQFTLNYTPNMKQIVDGQDQYSITWRGQDWRITDVREANDRMTVMFLCYRNDPVTAV* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |