Basic Information | |
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Taxon OID | 3300012667 Open in IMG/M |
Scaffold ID | Ga0157208_10000662 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9335 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (13.64%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Keswick, Ontario | |||||||
Coordinates | Lat. (o) | 44.22385 | Long. (o) | -79.4212 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F031091 | Metagenome / Metatranscriptome | 183 | Y |
F032541 | Metagenome / Metatranscriptome | 179 | Y |
F061656 | Metagenome / Metatranscriptome | 131 | Y |
F061834 | Metagenome / Metatranscriptome | 131 | Y |
F066569 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157208_1000066210 | F066569 | N/A | MDRAKYIQMRKSGQYDLAWFYEYFLKHKDENRITPPFEAFHQAFNMYFQMNGGTILELLDKKMDVTKIEDQQGNLLYIN* |
Ga0157208_1000066212 | F031091 | GAG | MKKLVSVFTCEHTGIVTTYTYRTHSITSGIEKAEFEYPKGYLEEFNKKEKYLKNLPKTKQMFLNPKTGKEVSYYRAKALGLVK* |
Ga0157208_1000066217 | F061834 | GAG | MAREVMEKKLFIENIILLREIEDRRDFMEEELGLDMSIYEEKFLQIIENLFKIHFSKEQFALIQYYIYQVPTLDNWDGKIDLSDGKDMITVDFETPEQVWNVITSIKEVKK* |
Ga0157208_1000066218 | F061656 | N/A | MAKFCFYSKSNPTQEPVGVVEALSREEAIKFFSLTKMLPVNDFLTIFEVKSYTYGAQEGIKESAKQLLKG* |
Ga0157208_1000066219 | F032541 | N/A | MSLINEIKEMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKVQFLPTTFAGMSKQQQDEIAMELGAKLNQGLSALGLAVERDRELKDKTIVGFFIYIEYLDKIIINALNQAAETPNN* |
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