NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157208_10000909

Scaffold Ga0157208_10000909


Overview

Basic Information
Taxon OID3300012667 Open in IMG/M
Scaffold IDGa0157208_10000909 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Maskinonge River, Ontario, Canada - S15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7345
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKeswick, Ontario
CoordinatesLat. (o)44.22385Long. (o)-79.4212Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F001043Metagenome / Metatranscriptome794Y
F004840Metagenome / Metatranscriptome421Y
F009530Metagenome / Metatranscriptome316Y
F017829Metagenome / Metatranscriptome238Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0157208_1000090916F017829AGGAMSRFRVEIYDANKMNDTTIFSEQGVDKEYLTELVFSNIRKFSGKVNAYVVDTQKKKKTTAMFLNEETVAKAKSQIKNLTAVELGL*
Ga0157208_1000090920F000311GAGGMYFELTAPTQVALNGAIWEAETIGLDPLRIGPLTFNIGTGSIEKVSRLRDKFNLKETYTSDYEPTGY*
Ga0157208_1000090921F001043AGGAGMSDYREGFDDGYKFAREELIEKLQEIDIADIDTWILDRLGEMIEGGNL*
Ga0157208_100009093F009530GGAGMTITYSIWQGSRLLSIDNVAHEVKAIDHLIASLNDSELGKKSKFSANIQNIKVGN*
Ga0157208_100009094F000447AGGMGYIEIFRLDNEGAGWVSLADATPDELLNIEIGLLQEGAL*
Ga0157208_100009096F085708AGAAGMNRLLTTLVQLALAVPALYMGRMVLREVIADAKEMWQESH*
Ga0157208_100009098F004840AGGMYKITSSYDSNPPHWSAEYETELGAWENFFLFTDWGMANEYRTVNIYTPSGKCYTKVFYRGGKVVTK*
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