NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137337_1009084

Scaffold Ga0137337_1009084


Overview

Basic Information
Taxon OID3300012675 Open in IMG/M
Scaffold IDGa0137337_1009084 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT333_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9226Long. (o)-106.9518Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061612Metagenome / Metatranscriptome131Y
F074512Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0137337_10090842F061612AGGAMPREIHRETFCCGYKKCPTVTVFDDGSIELSDDDSETGSVGTIKIRPEAVARLAELLASRKK*
Ga0137337_10090844F074512AGGAVTELLLVLALIGTTLIVVRGTFFRPVRRLWPALLGGSQCVGTWVGVAAGASGIVSPGYGHALDAVIVGAATSFLSLLADAVLLKLLGSPSEKV*

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