NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136612_10319342

Scaffold Ga0136612_10319342


Overview

Basic Information
Taxon OID3300012680 Open in IMG/M
Scaffold IDGa0136612_10319342 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0456Long. (o)164.0158Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029653Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0136612_103193422F029653GAGMRVPDRTGVVVGYRVWRVVPGKWQAPSESLHAQTCQRSWSLTGPTTAYCPPRVQGDPNKPLLKSGPCDESPGFDCSCGLYARYEPIEEAHLLPYVVGSVLTWGRVIHHAERSFFRAEKALPIAFVRPHGGGGAFPREAEDKLFRIAEQVGAGVVGSPEELRLYTEKEASKW*

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