NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137397_10000177

Scaffold Ga0137397_10000177


Overview

Basic Information
Taxon OID3300012685 Open in IMG/M
Scaffold IDGa0137397_10000177 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42728
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (79.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011490Metagenome / Metatranscriptome290Y
F014033Metagenome / Metatranscriptome266Y
F069889Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0137397_1000017717F011490AGGMDEEKVKKSLHDLNNRVGMILANAELMQLEQLSPKARERTKLIEEKSLELRELIRELGDHLFD*
Ga0137397_1000017738F014033AGGAGMDGLVEELLRLEGVKHKALVEIDAASYDAIVREQMRLVAVSRNTAASKVTDVKRLLALSQLITLNTRLLQNLVSTTPWFAFSQNGYTPDGQVAAPTGSRGVVLEA*
Ga0137397_1000017743F069889GGAGMDSEQILKALERERELLEDFICLSEEQLLLLDDENIDAVNALLERRADLMIELTAIEATLGTWITQIRTDPSVTADMMHQLRAVNDEIVSMANHIVEIDEQTHARLDEIKEKARTELQEVDREAKMLHLYAEAYQKPTSRFNLKG*
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