NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137397_10001076

Scaffold Ga0137397_10001076


Overview

Basic Information
Taxon OID3300012685 Open in IMG/M
Scaffold IDGa0137397_10001076 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19007
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001368Metagenome713Y
F005910Metagenome / Metatranscriptome386Y

Sequences

Protein IDFamilyRBSSequence
Ga0137397_1000107610F001368AGGAGGMGRDSATSERLRNLITRIESLTESGELHWEKQTGSAHRYARLNNNLLILGPATPLSDTSVPRYLFITPFDSPDCIEINSDDNDLGSAVAKLAQEVETASSNEPPTDPFAIDDQWLERLTS
Ga0137397_1000107618F005910GAGGMRKIILALIFVVAAASLAAADTIYLRDGRTVRGTLLGFINGRFVVRVENRYTTYPNATTDPNVARNRANEGEIQYFRPNEVDRIEIDGRALDDARFETKTVQVGLDPNWVDTGVDLRRSEHVQINATGVITAGRTRITPDGVQRTDPSAPLPNGKEGELIGAIGDDPRAPIIELGANREFIADRDGRLYLTANRGSYSDARGG
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