Basic Information | |
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Taxon OID | 3300012702 Open in IMG/M |
Scaffold ID | Ga0157596_1119075 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES114 metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7291 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (20.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F028149 | Metagenome / Metatranscriptome | 192 | N |
F068565 | Metagenome / Metatranscriptome | 124 | N |
F072266 | Metagenome / Metatranscriptome | 121 | N |
F085631 | Metagenome / Metatranscriptome | 111 | Y |
F090287 | Metagenome / Metatranscriptome | 108 | Y |
F097235 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0157596_111907510 | F068565 | N/A | MLIERTIFSLCEVLPNTTLQVRMANQIVDGDVVKASTYNRYCLTPGSDLTGQPPEVVKIANAIWTPEAIAAYNANLKPTLK* |
Ga0157596_111907512 | F090287 | AGGAGG | MPALTPSQIAALSGCFDCLSPGVKESFMVTLLQQIQGSLPGASLTTTSPGGLLTVTATSAANLARKKFTLQNQKNEELFVKFGTGASTTDYHIVLPAHNTGSKHSDPLMLDGYTGAISVAPTTGSPSYTFAEFV* |
Ga0157596_111907513 | F097235 | N/A | MLAASQQGKDFTMYGQMMGKRKMDGMGRMGPEVETVEFTPPKELKLEGESGTAMVDWRTTPRGTIEIIGFDGITLGESGRQDMEEDAIENEMDDMEEEA* |
Ga0157596_111907514 | F028149 | AGGAG | MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGSWENPTGASCSGQPCDPTENKIGWGWTRNTYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGSLAGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAAAITAASLGKLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPVCEADPGNPAQSYNSADPVCGVVVQFTAVPNDAGNYVIGTTGIMCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNLIQLAGSALGTTTEVVPCTNVTLEFAI* |
Ga0157596_111907515 | F085631 | N/A | RVSYRLPIEVAQMLEEEAIRSRRTKTAVLIIAIEDHVMRSAIKKPVDTRKTR* |
Ga0157596_11190752 | F072266 | N/A | MIQSPKQEFQRNKERVMALERVLDSPDFQTALMAAFNNLCWNLPASENPQHGWNANCRRQGAKALIEELHGLVSMQREKPTVNQNLE* |
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