NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157599_1056907

Scaffold Ga0157599_1056907


Overview

Basic Information
Taxon OID3300012715 Open in IMG/M
Scaffold IDGa0157599_1056907 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES122 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076751Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0157599_10569071F076751N/AMPDLTFSELPIDRNPLTKKPTSETWEQGIVMSRAEQTRNRMPNVTLSQAEAVAKAAIQRGKEPMDAGFWYHQPVGGRAQEARPRQPVDKNTRGGLGSKANESNVDLVVFGHEQDGVGVSQGEHWEMDQRDWLGFKKRVGGMDANNAVVDAVVFGHDQDGFTSIKKLEEEMKKLPQFAGAAGVCSSEVSSSNIMQDAKIVPSKFTKLKNSSDVDMVVFGHDQDGSGEGPNQDMEDLEASPLFFGSAGVHTTDASLKEAAMWYGGPKGRRTTPLQHSSSSTDQSFQEMQDGPGCPQARFKGSHAFAGAAGN
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