Scaffold Ga0157557_1072853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157557_1072853

Scaffold Ga0157557_1072853

Overview

Basic Information
Taxon OID	3300012718 Open in IMG/M
Scaffold ID	Ga0157557_1072853 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES050 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1096
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083660	Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157557_10728533	F083660	N/A	SPSDDIEGINNFDIFVIQEGAKTSDGVIVDYDKFIIQRINEFPVTFRPKSGSDERILTLPLDGTQSIRYVKAKILEALEIPEGANISIWECISSEGVTSNPLKKRSFRKPLDHPISDSDQRRVKEFFQNCEDGTKTLYYHL*

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