NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157612_1271160

Scaffold Ga0157612_1271160


Overview

Basic Information
Taxon OID3300012721 Open in IMG/M
Scaffold IDGa0157612_1271160 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES139 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2307
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F022593Metagenome / Metatranscriptome213N
F073465Metagenome / Metatranscriptome120N
F100356Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0157612_12711601F100356N/AEYRTLKNEIELLESVQRLMNEVNTELDFNDNHMTMLELFLTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN*
Ga0157612_12711602F011134N/AMSTFAKLEENYDLKETLVDTIKIDSIRQFKMCVDEINTEIIVINESNVKQYEDLNEVLINLRRLDSKWNIGSNSDKPWKFKYMLEENLRRRILEIDISDLDTIDIDGYEKFHDALRDLRAEDPGWSINNTRRNFLVLLTSEDIGLMNNHLESREKRLME*
Ga0157612_12711604F073465N/AMSNWRYRWRRPRPRYVPVPPAPRIQAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLVSDV*
Ga0157612_12711607F022593N/AMNRQEELKFFRHKVEQIRKYKLANYLAKRDIADILLMEDLEAESRRPLAHNHELLERIDLLLGILEGIGELIIEFKEQEVS*
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