Scaffold Ga0157602_1071041

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157602_1071041

Scaffold Ga0157602_1071041

Overview

Basic Information
Taxon OID	3300012730 Open in IMG/M
Scaffold ID	Ga0157602_1071041 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES126 metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	919
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Peronosporales → Peronosporaceae → Phytophthora → Phytophthora ramorum	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)		Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000406	Metagenome / Metatranscriptome	1172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157602_10710411	F000406	N/A	LVKEIQISTELRRMGEIGLVPQNTVDDLIKQKFEAPLPRTQDDDDPFIKGEFDVIKELLEKIPEAKDGKQKVDRVIDICGPAPKGTGLQNLRECIIETKWKYDVAPEEKQVVWKQMILNFMERYFYLICFATYAKAHGPDGFQKSFVQWMDEHKELRTMIEEGKDKLEWYRQVDPAKLNTLKELINAPNYKENMATLIRTIYEFAFLTYADLPRGPIKNNSMRKLAAKTLLEILPPDIATNVQKKLDEQNASPDFVTLVGLVSYYGQEQEA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.